IL_7MQ8_039

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_039 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1581

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7MQ8|1|L1|C|491
7MQ8|1|L1|C|492
7MQ8|1|L1|A|493
7MQ8|1|L1|C|494
7MQ8|1|L1|U|495
*
7MQ8|1|L1|A|508
7MQ8|1|L1|G|509

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4, X isoform

Chain LF

40S ribosomal protein S24

Chain NC

Neuroguidin