IL_7MQ8_055
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACCG*UUCC
- Length
- 9 nucleotides
- Bulged bases
- 7MQ8|1|L1|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_055 not in the Motif Atlas
- Geometric match to IL_2OE8_002
- Geometric discrepancy: 0.3541
- The information below is about IL_2OE8_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34618.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7MQ8|1|L1|G|1092
7MQ8|1|L1|A|1093
7MQ8|1|L1|C|1094
7MQ8|1|L1|C|1095
7MQ8|1|L1|G|1096
*
7MQ8|1|L1|U|1136
7MQ8|1|L1|U|1137
7MQ8|1|L1|C|1138
7MQ8|1|L1|C|1139
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LU
- DDB1- and CUL4-associated factor 13
- Chain NE
- Uncharacterized protein C1orf131
- Chain NF
- 40S ribosomal protein S13
- Chain NO
- 40S ribosomal protein S15a
- Chain NQ
- 40S ribosomal protein S27
- Chain SL
- rRNA-processing protein FCF1 homolog
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