IL_7MQ8_090

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

7MQ8|1|L1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_090 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4145

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7MQ8|1|L1|G|924
7MQ8|1|L1|G|925
7MQ8|1|L1|A|926
*
7MQ8|1|L1|U|1015
7MQ8|1|L1|U|1016
7MQ8|1|L1|U|1017
7MQ8|1|L1|U|1018

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NF

40S ribosomal protein S13

Chain NI

Ribosomal RNA-processing protein 7 homolog A

Chain NQ

40S ribosomal protein S27