IL_7MQ9_039

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_039 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1617

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7MQ9|1|L1|C|491
7MQ9|1|L1|C|492
7MQ9|1|L1|A|493
7MQ9|1|L1|C|494
7MQ9|1|L1|U|495
*
7MQ9|1|L1|A|508
7MQ9|1|L1|G|509

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4 X isoform

Chain LF

40S ribosomal protein S24