IL_7MQ9_044

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_044 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2858

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7MQ9|1|L1|G|563
7MQ9|1|L1|A|564
7MQ9|1|L1|G|565
*
7MQ9|1|L1|C|585
7MQ9|1|L1|G|586
7MQ9|1|L1|A|587
7MQ9|1|L1|G|588
7MQ9|1|L1|G|589
7MQ9|1|L1|A|590
7MQ9|1|L1|U|591
7MQ9|1|L1|C|592

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1 homolog