IL_7MQ9_051
3D structure
- PDB id
- 7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.87 Å
Loop
- Sequence
- CGGCC*GAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ9_051 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3387
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7MQ9|1|L1|C|927
7MQ9|1|L1|G|928
7MQ9|1|L1|G|929
7MQ9|1|L1|C|930
7MQ9|1|L1|C|931
*
7MQ9|1|L1|G|1010
7MQ9|1|L1|A|1011
7MQ9|1|L1|A|1012
7MQ9|1|L1|U|1013
7MQ9|1|L1|G|1014
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NF
- 40S ribosomal protein S13
- Chain NI
- Ribosomal RNA-processing protein 7 homolog A
- Chain NM
- 40S ribosomal protein S3a
- Chain NQ
- 40S ribosomal protein S27
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