IL_7MQ9_059
3D structure
- PDB id
- 7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.87 Å
Loop
- Sequence
- GA*UUACACACCGCC
- Length
- 14 nucleotides
- Bulged bases
- 7MQ9|1|L1|U|1692, 7MQ9|1|L1|A|1695, 7MQ9|1|L1|C|1696, 7MQ9|1|L1|C|1703
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ9_059 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.1439
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
7MQ9|1|L1|G|1207
7MQ9|1|L1|A|1208
*
7MQ9|1|L1|U|1691
7MQ9|1|L1|U|1692
7MQ9|1|L1|A|1695
7MQ9|1|L1|C|1696
7MQ9|1|L1|A|1697
7MQ9|1|L1|C|1698
7MQ9|1|L1|A|1699
7MQ9|1|L1|C|1700
7MQ9|1|L1|C|1701
7MQ9|1|L1|G|1702
7MQ9|1|L1|C|1703
7MQ9|1|L1|C|1704
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LO
- Periodic tryptophan protein 2 homolog
- Chain LQ
- WD repeat-containing protein 3
- Chain LR
- Transducin beta-like protein 3
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
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