IL_7MQ9_069

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_069 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1385

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7MQ9|1|L1|U|1347
7MQ9|1|L1|G|1348
7MQ9|1|L1|G|1349
*
7MQ9|1|L1|C|1380
7MQ9|1|L1|G|1381
7MQ9|1|L1|A|1382

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NR

RRP12-like protein