IL_7MQ9_093

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_093 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.2246

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

7MQ9|1|L1|U|1714
7MQ9|1|L1|A|1715
7MQ9|1|L1|C|1716
7MQ9|1|L1|C|1717
*
7MQ9|1|L1|G|1816
7MQ9|1|L1|G|1817
7MQ9|1|L1|A|1818
7MQ9|1|L1|A|1819

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LQ

WD repeat-containing protein 3

Chain NA

U3 small nucleolar ribonucleoprotein protein MPP10