IL_7MQA_055

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_055 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1102

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7MQA|1|L1|G|942
7MQA|1|L1|U|943
7MQA|1|L1|A|944
7MQA|1|L1|U|945
*
7MQA|1|L1|A|981
7MQA|1|L1|G|982
7MQA|1|L1|A|983
7MQA|1|L1|C|984

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NG

40S ribosomal protein S14

Chain NM

40S ribosomal protein S3a