IL_7MQA_058
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_058 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1908
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7MQA|1|L1|C|1047
7MQA|1|L1|G|1048
7MQA|1|L1|A|1049
7MQA|1|L1|A|1050
7MQA|1|L1|G|1051
*
7MQA|1|L1|C|1067
7MQA|1|L1|G|1068
7MQA|1|L1|U|1069
7MQA|1|L1|A|1070
7MQA|1|L1|G|1071
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
- Chain NG
- 40S ribosomal protein S14
- Chain NL
- Probable dimethyladenosine transferase
- Chain NS
- Probable ATP-dependent RNA helicase DHX37
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