IL_7MQA_059
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7MQA|1|L1|C|1153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_059 not in the Motif Atlas
- Geometric match to IL_5Z1I_002
- Geometric discrepancy: 0.2153
- The information below is about IL_5Z1I_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7MQA|1|L1|C|1091
7MQA|1|L1|G|1092
7MQA|1|L1|A|1093
*
7MQA|1|L1|U|1152
7MQA|1|L1|C|1153
7MQA|1|L1|U|1154
7MQA|1|L1|U|1155
7MQA|1|L1|U|1156
7MQA|1|L1|G|1157
7MQA|1|L1|G|1158
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LD
- 40S ribosomal protein S11
- Chain NF
- 40S ribosomal protein S13
- Chain NO
- 40S ribosomal protein S15a
- Chain SL
- rRNA-processing protein FCF1 homolog
- Chain SR
- 40S ribosomal protein S23
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