IL_7MSH_065

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7MSH|1|A|G|2035, 7MSH|1|A|U|2050, 7MSH|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSH_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7MSH|1|A|U|2032
7MSH|1|A|G|2033
7MSH|1|A|C|2034
7MSH|1|A|G|2035
7MSH|1|A|A|2036
7MSH|1|A|A|2037
7MSH|1|A|G|2038
*
7MSH|1|A|C|2047
7MSH|1|A|G|2048
7MSH|1|A|A|2049
7MSH|1|A|U|2050
7MSH|1|A|G|2051
7MSH|1|A|U|2052
7MSH|1|A|A|2053
7MSH|1|A|U|2054
7MSH|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA