3D structure

PDB id
7MSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mtb 70SIC in complex with MtbEttA at Trans_R0 state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.79 Å

Loop

Sequence
GAGGUAG*CGAAUGC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MSM_032 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.1259
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7MSM|1|A|G|985
7MSM|1|A|A|986
7MSM|1|A|G|987
7MSM|1|A|G|988
7MSM|1|A|U|989
7MSM|1|A|A|990
7MSM|1|A|G|991
*
7MSM|1|A|C|1044
7MSM|1|A|G|1045
7MSM|1|A|A|1046
7MSM|1|A|A|1047
7MSM|1|A|U|1048
7MSM|1|A|G|1049
7MSM|1|A|C|1050

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain Z
50S ribosomal protein L30

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