IL_7MSM_036

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_036 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.2762

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MSM|1|A|C|1005
7MSM|1|A|C|1006
7MSM|1|A|G|1007
7MSM|1|A|A|1008
7MSM|1|A|U|1009
7MSM|1|A|G|1010
*
7MSM|1|A|C|1026
7MSM|1|A|U|1027
7MSM|1|A|G|1028
7MSM|1|A|A|1029
7MSM|1|A|C|1030
7MSM|1|A|G|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25