IL_7MSM_086

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7MSM|1|A|A|2677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_086 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0944

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7MSM|1|A|G|2307
7MSM|1|A|A|2308
*
7MSM|1|A|U|2676
7MSM|1|A|A|2677
7MSM|1|A|C|2678
7MSM|1|A|C|2679

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain x

Energy-dependent translational throttle protein EttA

Chain y

Transfer RNA; tRNA