IL_7MSM_107

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_107 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0856

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7MSM|1|A|C|2890
7MSM|1|A|U|2891
7MSM|1|A|A|2892
7MSM|1|A|G|2893
7MSM|1|A|U|2894
7MSM|1|A|A|2895
7MSM|1|A|C|2896
*
7MSM|1|A|G|2901
7MSM|1|A|G|2902
7MSM|1|A|A|2903
7MSM|1|A|C|2904
7MSM|1|A|C|2905
7MSM|1|A|G|2906

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6