IL_7MSM_169

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

7MSM|1|a|C|1192, 7MSM|1|a|A|1193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_169 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7MSM|1|a|G|1048
7MSM|1|a|G|1049
*
7MSM|1|a|U|1191
7MSM|1|a|C|1192
7MSM|1|a|A|1193
7MSM|1|a|U|1194
7MSM|1|a|C|1195

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z