IL_7N1P_014

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7N1P|1|16|U|244, 7N1P|1|16|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_014 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0915

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7N1P|1|16|G|242
7N1P|1|16|A|243
7N1P|1|16|U|244
7N1P|1|16|U|245
7N1P|1|16|A|246
7N1P|1|16|G|247
*
7N1P|1|16|C|277
7N1P|1|16|G|278
7N1P|1|16|A|279
7N1P|1|16|C|280
7N1P|1|16|G|281
7N1P|1|16|A|282
7N1P|1|16|U|283
7N1P|1|16|C|284

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SQ

30S ribosomal protein S17