IL_7N1P_026

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7N1P|1|16|A|532, 7N1P|1|16|U|534, 7N1P|1|16|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2353

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7N1P|1|16|G|515
7N1P|1|16|PSU|516
7N1P|1|16|G|517
7N1P|1|16|C|518
7N1P|1|16|C|519
7N1P|1|16|A|520
7N1P|1|16|G|521
*
7N1P|1|16|C|528
7N1P|1|16|G|529
7N1P|1|16|G|530
7N1P|1|16|U|531
7N1P|1|16|A|532
7N1P|1|16|A|533
7N1P|1|16|U|534
7N1P|1|16|A|535
7N1P|1|16|C|536

Current chains

Chain 16

16S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain SC

30S ribosomal protein S3

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12

Chain mR

mRNA