IL_7N1P_036

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7N1P|1|16|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.054

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7N1P|1|16|U|684
7N1P|1|16|G|685
7N1P|1|16|U|686
7N1P|1|16|A|687
7N1P|1|16|G|688
*
7N1P|1|16|C|699
7N1P|1|16|G|700
7N1P|1|16|U|701
7N1P|1|16|A|702
7N1P|1|16|G|703
7N1P|1|16|A|704
7N1P|1|16|G|705
7N1P|1|16|A|706

Current chains

Chain 16

16S rRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SK

30S ribosomal protein S11