3D structure

PDB id
7N1P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
7N1P|1|23|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7N1P_101 not in the Motif Atlas
Geometric match to IL_5J7L_280
Geometric discrepancy: 0.0575
The information below is about IL_5J7L_280
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

7N1P|1|23|U|1018
7N1P|1|23|U|1019
7N1P|1|23|A|1020
7N1P|1|23|A|1021
7N1P|1|23|G|1022
7N1P|1|23|U|1023
7N1P|1|23|G|1024
*
7N1P|1|23|C|1140
7N1P|1|23|U|1141
7N1P|1|23|A|1142
7N1P|1|23|A|1143
7N1P|1|23|A|1144

Current chains

Chain 23
23S rRNA

Nearby chains

Chain LF
50S ribosomal protein L6
Chain LM
50S ribosomal protein L13
Chain Lj
50S ribosomal protein L36

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