IL_7N1P_135

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7N1P|1|23|A|1801, 7N1P|1|23|C|1816, 7N1P|1|23|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_135 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0427

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7N1P|1|23|U|1798
7N1P|1|23|G|1799
7N1P|1|23|C|1800
7N1P|1|23|A|1801
7N1P|1|23|A|1802
7N1P|1|23|A|1803
7N1P|1|23|C|1804
*
7N1P|1|23|G|1813
7N1P|1|23|G|1814
7N1P|1|23|A|1815
7N1P|1|23|C|1816
7N1P|1|23|G|1817
7N1P|1|23|U|1818
7N1P|1|23|A|1819
7N1P|1|23|U|1820
7N1P|1|23|A|1821

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2