IL_7N2C_013

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7N2C|1|16|U|244, 7N2C|1|16|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_013 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.072

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7N2C|1|16|G|242
7N2C|1|16|A|243
7N2C|1|16|U|244
7N2C|1|16|U|245
7N2C|1|16|A|246
7N2C|1|16|G|247
*
7N2C|1|16|C|277
7N2C|1|16|G|278
7N2C|1|16|A|279
7N2C|1|16|C|280
7N2C|1|16|G|281
7N2C|1|16|A|282
7N2C|1|16|U|283
7N2C|1|16|C|284

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SQ

30S ribosomal protein S17