IL_7N2C_055

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_055 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1396

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7N2C|1|16|C|1303
7N2C|1|16|G|1304
7N2C|1|16|G|1305
7N2C|1|16|A|1306
7N2C|1|16|U|1307
7N2C|1|16|U|1308
*
7N2C|1|16|A|1329
7N2C|1|16|U|1330
7N2C|1|16|G|1331
7N2C|1|16|A|1332
7N2C|1|16|A|1333
7N2C|1|16|G|1334

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SM

30S ribosomal protein S13