IL_7N2C_079

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7N2C|1|23|G|801, 7N2C|1|23|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_079 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0653

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7N2C|1|23|G|674
7N2C|1|23|A|675
7N2C|1|23|A|676
7N2C|1|23|A|677
7N2C|1|23|C|678
*
7N2C|1|23|G|799
7N2C|1|23|A|800
7N2C|1|23|G|801
7N2C|1|23|A|802
7N2C|1|23|U|803
7N2C|1|23|A|804
7N2C|1|23|G|805
7N2C|1|23|C|806

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15