IL_7N2C_090

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_090 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.1129

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7N2C|1|23|G|864
7N2C|1|23|C|865
7N2C|1|23|A|866
7N2C|1|23|C|867
7N2C|1|23|U|868
*
7N2C|1|23|A|909
7N2C|1|23|A|910
7N2C|1|23|A|911
7N2C|1|23|C|912

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16