IL_7N2C_094

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7N2C|1|23|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_094 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1219

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7N2C|1|23|C|994
7N2C|1|23|C|995
7N2C|1|23|A|996
*
7N2C|1|23|U|1159
7N2C|1|23|G|1160

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LM

50S ribosomal protein L13

Chain LT

50S ribosomal protein L20

Chain LU

50S ribosomal protein L21

Chain Ld

50S ribosomal protein L30