IL_7N2C_115

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7N2C|1|23|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_115 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1324

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7N2C|1|23|G|1432
7N2C|1|23|A|1433
7N2C|1|23|A|1434
7N2C|1|23|G|1435
*
7N2C|1|23|C|1557
7N2C|1|23|C|1558
7N2C|1|23|U|1559
7N2C|1|23|G|1560
7N2C|1|23|C|1561

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LB

50S ribosomal protein L2