IL_7N2C_185

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.061

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7N2C|1|23|U|1851
7N2C|1|23|U|1852
7N2C|1|23|A|1853
7N2C|1|23|A|1854
7N2C|1|23|U|1855
7N2C|1|23|U|1856
7N2C|1|23|G|1857
7N2C|1|23|A|1858
7N2C|1|23|U|1859
7N2C|1|23|G|1860
*
7N2C|1|23|U|1882
7N2C|1|23|U|1883
7N2C|1|23|G|1884
7N2C|1|23|A|1885
7N2C|1|23|U|1886
7N2C|1|23|C|1887
7N2C|1|23|G|1888
7N2C|1|23|A|1889
7N2C|1|23|A|1890
7N2C|1|23|G|1891

Current chains

Chain 23

23S rRNA

Nearby chains

Chain Dt

Transfer RNA; tRNA

Chain LA

50S ribosomal protein L1