IL_7N2V_025
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7N2V|1|16|A|532, 7N2V|1|16|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N2V_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.241
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7N2V|1|16|G|515
7N2V|1|16|PSU|516
7N2V|1|16|G|517
7N2V|1|16|C|518
7N2V|1|16|C|519
7N2V|1|16|A|520
7N2V|1|16|G|521
*
7N2V|1|16|C|528
7N2V|1|16|G|529
7N2V|1|16|G|530
7N2V|1|16|U|531
7N2V|1|16|A|532
7N2V|1|16|A|533
7N2V|1|16|U|534
7N2V|1|16|A|535
7N2V|1|16|C|536
Current chains
- Chain 16
- 16S rRNA
Nearby chains
- Chain EF
- Elongation factor G
- Chain SC
- 30S ribosomal protein S3
- Chain SD
- 30S ribosomal protein S4
- Chain SL
- 30S ribosomal protein S12
- Chain mR
- mRNA
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