IL_7N2V_167

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7N2V|1|23|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_167 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0613

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7N2V|1|23|C|2636
7N2V|1|23|U|2637
7N2V|1|23|G|2638
7N2V|1|23|A|2639
7N2V|1|23|G|2640
*
7N2V|1|23|C|2774
7N2V|1|23|G|2775
7N2V|1|23|A|2776
7N2V|1|23|G|2777
7N2V|1|23|A|2778
7N2V|1|23|U|2779
7N2V|1|23|G|2780
7N2V|1|23|A|2781
7N2V|1|23|G|2782

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13