IL_7N8B_022

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7N8B|1|A1|U|534, 7N8B|1|A1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_022 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.0852

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7N8B|1|A1|G|531
7N8B|1|A1|A|532
7N8B|1|A1|A|533
7N8B|1|A1|U|534
7N8B|1|A1|G|535
7N8B|1|A1|U|536
7N8B|1|A1|A|537
7N8B|1|A1|G|538
*
7N8B|1|A1|U|553
7N8B|1|A1|A|554
7N8B|1|A1|U|555
7N8B|1|A1|U|556
7N8B|1|A1|A|557
7N8B|1|A1|U|558
7N8B|1|A1|A|559
7N8B|1|A1|G|560
7N8B|1|A1|C|561

Current chains

Chain A1

25S

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

60S ribosomal protein L20-A