IL_7N8B_072

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_072 not in the Motif Atlas

Homologous match to IL_8C3A_078

Geometric discrepancy: 0.1516

The information below is about IL_8C3A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7N8B|1|A1|U|1702
7N8B|1|A1|U|1703
7N8B|1|A1|A|1704
7N8B|1|A1|U|1705
7N8B|1|A1|C|1706
7N8B|1|A1|A|1707
*
7N8B|1|A1|U|1737
7N8B|1|A1|C|1738
7N8B|1|A1|U|1739
7N8B|1|A1|U|1740
7N8B|1|A1|A|1741
7N8B|1|A1|U|1742
7N8B|1|A1|G|1743

Current chains

Chain A1

25S

Nearby chains

Chain Ag

60S ribosomal protein L34-A