IL_7N8B_168

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7N8B|1|B5|U|313, 7N8B|1|B5|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_168 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.0818

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7N8B|1|B5|U|311
7N8B|1|B5|A|312
7N8B|1|B5|U|313
7N8B|1|B5|C|314
7N8B|1|B5|A|315
7N8B|1|B5|A|316
*
7N8B|1|B5|U|348
7N8B|1|B5|U|349
7N8B|1|B5|U|350
7N8B|1|B5|C|351
7N8B|1|B5|A|352
7N8B|1|B5|A|353
7N8B|1|B5|C|354
7N8B|1|B5|G|355

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A

Chain BX

40S ribosomal protein S23-A