IL_7N8B_181

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_181 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.132

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7N8B|1|B5|G|616
7N8B|1|B5|U|617
7N8B|1|B5|U|618
7N8B|1|B5|A2M|619
7N8B|1|B5|A|620
7N8B|1|B5|A|621
7N8B|1|B5|A|622
*
7N8B|1|B5|U|1104
7N8B|1|B5|C|1105

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BX

40S ribosomal protein S23-A

Chain Ba

40S ribosomal protein S26-B