IL_7N8B_194

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_194 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.0783

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7N8B|1|B5|G|871
7N8B|1|B5|G|872
7N8B|1|B5|U|873
7N8B|1|B5|C|874
*
7N8B|1|B5|G|953
7N8B|1|B5|G|954
7N8B|1|B5|A|955
7N8B|1|B5|C|956

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BB

40S ribosomal protein S1-A

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27-A