IL_7N8B_223
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 7N8B|1|B5|U|1491, 7N8B|1|B5|A|1516, 7N8B|1|B5|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N8B_223 not in the Motif Atlas
- Homologous match to IL_8CRE_463
- Geometric discrepancy: 0.3962
- The information below is about IL_8CRE_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7N8B|1|B5|G|1488
7N8B|1|B5|U|1489
7N8B|1|B5|C|1490
7N8B|1|B5|U|1491
7N8B|1|B5|A|1492
7N8B|1|B5|A|1493
7N8B|1|B5|C|1494
*
7N8B|1|B5|G|1513
7N8B|1|B5|U|1514
7N8B|1|B5|A|1515
7N8B|1|B5|A|1516
7N8B|1|B5|U|1517
7N8B|1|B5|C|1518
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 40S ribosomal protein S3
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
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