IL_7N8B_256

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

(OMG)UGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

7N8B|1|B5|A|579

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_256 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1441

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7N8B|1|B5|OMG|562
7N8B|1|B5|U|563
7N8B|1|B5|G|564
7N8B|1|B5|C|565
7N8B|1|B5|C|566
7N8B|1|B5|A|567
7N8B|1|B5|G|568
*
7N8B|1|B5|C|575
7N8B|1|B5|G|576
7N8B|1|B5|G|577
7N8B|1|B5|OMU|578
7N8B|1|B5|A|579
7N8B|1|B5|A|580
7N8B|1|B5|U|581
7N8B|1|B5|U|582
7N8B|1|B5|C|583

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A

Chain Bh

Suppressor protein STM1