IL_7N8B_263
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7N8B|1|B5|C|1274, 7N8B|1|B5|U|1432, 7N8B|1|B5|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N8B_263 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1218
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7N8B|1|B5|U|1272
7N8B|1|B5|G|1273
7N8B|1|B5|C|1274
7N8B|1|B5|A|1275
7N8B|1|B5|U|1276
7N8B|1|B5|G|1277
7N8B|1|B5|G|1278
*
7N8B|1|B5|U|1430
7N8B|1|B5|C|1431
7N8B|1|B5|U|1432
7N8B|1|B5|G|1433
7N8B|1|B5|U|1434
7N8B|1|B5|G|1435
7N8B|1|B5|A|1436
7N8B|1|B5|U|1437
7N8B|1|B5|G|1438
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 40S ribosomal protein S3
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bh
- Suppressor protein STM1
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