IL_7NAC_075

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAC_075 not in the Motif Atlas

Geometric match to IL_4R4V_001

Geometric discrepancy: 0.2681

The information below is about IL_4R4V_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7NAC|1|1|C|2444
7NAC|1|1|A|2445
*
7NAC|1|1|U|2501
7NAC|1|1|A|2502
7NAC|1|1|G|2503

Current chains

Chain 1

25S rRNA

Nearby chains

Chain a

Ribosomal protein

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase