3D structure

PDB id
7NAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.78 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
7NAU|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NAU_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.2563
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

7NAU|1|A|U|684
7NAU|1|A|G|685
7NAU|1|A|U|686
7NAU|1|A|A|687
7NAU|1|A|G|688
*
7NAU|1|A|C|699
7NAU|1|A|G|700
7NAU|1|A|U|701
7NAU|1|A|A|702
7NAU|1|A|G|703
7NAU|1|A|A|704
7NAU|1|A|G|705
7NAU|1|A|A|706

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.1711 s