IL_7NAV_030

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

7NAV|1|A|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAV_030 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.1309

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7NAV|1|A|U|605
7NAV|1|A|G|606
7NAV|1|A|A|607
7NAV|1|A|A|608
7NAV|1|A|A|609
7NAV|1|A|U|610
7NAV|1|A|C|611
7NAV|1|A|C|612
*
7NAV|1|A|G|628
7NAV|1|A|A|629
7NAV|1|A|A|630
7NAV|1|A|C|631
7NAV|1|A|U|632
7NAV|1|A|G|633

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain H

30S ribosomal protein S8

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17