IL_7NAW_020

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAW_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1003

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NAW|1|A|U|409
7NAW|1|A|G|410
7NAW|1|A|A|411
7NAW|1|A|A|412
7NAW|1|A|G|413
7NAW|1|A|A|414
7NAW|1|A|A|415
7NAW|1|A|G|416
*
7NAW|1|A|U|427
7NAW|1|A|G|428
7NAW|1|A|U|429
7NAW|1|A|A|430
7NAW|1|A|A|431
7NAW|1|A|A|432
7NAW|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4