7NAW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7NAW_001 | 1/A/12:22 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_7NAW_007 | 1/A/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_7NAW_008 | 1/A/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_7NAW_010 | 1/A/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_7NAW_013 | 1/A/522:527 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_7NAW_014 | 1/A/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_7NAW_016 | 1/A/726:731 | GNRA | homologous HL_6CZR_087 NA | |
| HL_7NAW_019 | 1/A/862:867 | GNRA | homologous HL_6CZR_090 NA | |
| HL_7NAW_024 | 1/A/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_7NAW_025 | 1/A/1089:1096 | T-loop related | homologous HL_6CZR_096 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NAW_002 | No text annotation | ||
| HL_7NAW_003 | GNRA | ||
| HL_7NAW_004 | GNRA | ||
| HL_7NAW_005 | UNCG | ||
| HL_7NAW_006 | GNRA related | ||
| HL_7NAW_009 | UNCG | ||
| HL_7NAW_011 | No text annotation | ||
| HL_7NAW_012 | GNRA wlth tandem sheared | ||
| HL_7NAW_015 | No text annotation | ||
| HL_7NAW_017 | No text annotation | ||
| HL_7NAW_018 | No text annotation | ||
| HL_7NAW_020 | GNRA | ||
| HL_7NAW_021 | No text annotation | ||
| HL_7NAW_022 | No text annotation | ||
| HL_7NAW_023 | No text annotation | ||
| HL_7NAW_026 | No text annotation | ||
| HL_7NAW_027 | GNRA | ||
| HL_7NAW_028 | No text annotation | ||
| HL_7NAW_029 | T-loop with 3 stacked bulged bases | ||
| HL_7NAW_030 | No text annotation | ||
| HL_7NAW_031 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7NAW_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_7NAW_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_7NAW_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_7NAW_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_7NAW_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_7NAW_009 | 1/A/128:131, 1/A/231:233 | No text annotation | geometric IL_8B0X_009 IL_76400.1 | |
| IL_7NAW_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_7NAW_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_7NAW_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_7NAW_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_7NAW_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_7NAW_018 | 1/A/371:375, 1/A/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_7NAW_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_7NAW_022 | 1/A/446:450, 1/A/483:488 | No text annotation | geometric IL_8B0X_021 IL_82100.1 | |
| IL_7NAW_023 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_6CZR_406 NA | |
| IL_7NAW_024 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_7NAW_025 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_7NAW_026 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_7NAW_027 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_7NAW_028 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_7NAW_030 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_7NAW_031 | 1/A/654:655, 1/A/751:754 | No text annotation | geometric IL_8B0X_030 IL_74641.2 | |
| IL_7NAW_036 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_6CZR_144 NA | |
| IL_7NAW_037 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_7NAW_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NAW_006 | No text annotation | ||
| IL_7NAW_007 | No text annotation | ||
| IL_7NAW_008 | Multiple bulged bases | ||
| IL_7NAW_011 | No text annotation | ||
| IL_7NAW_013 | No text annotation | ||
| IL_7NAW_015 | No text annotation | ||
| IL_7NAW_020 | No text annotation | ||
| IL_7NAW_021 | No text annotation | ||
| IL_7NAW_029 | Major groove minor groove platform; mini C-loop | ||
| IL_7NAW_032 | No text annotation | ||
| IL_7NAW_033 | Tandem non-canonical cWW pairs | ||
| IL_7NAW_034 | No text annotation | ||
| IL_7NAW_035 | No text annotation | ||
| IL_7NAW_039 | No text annotation | ||
| IL_7NAW_040 | No text annotation | ||
| IL_7NAW_041 | No text annotation | ||
| IL_7NAW_042 | No text annotation | ||
| IL_7NAW_043 | No text annotation | ||
| IL_7NAW_044 | No text annotation | ||
| IL_7NAW_045 | No text annotation | ||
| IL_7NAW_046 | Minor groove platform | ||
| IL_7NAW_047 | Single bulged U | ||
| IL_7NAW_048 | Isolated non-canonical cWW pair | ||
| IL_7NAW_049 | No text annotation | ||
| IL_7NAW_050 | No text annotation | ||
| IL_7NAW_051 | No text annotation | ||
| IL_7NAW_052 | No text annotation | ||
| IL_7NAW_053 | 180 degree turn | ||
| IL_7NAW_054 | No text annotation | ||
| IL_7NAW_055 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7NAW_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_8B0X_001 J3_58657.1 | |
| J3_7NAW_002 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_7NAW_003 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.1 | |
| J3_7NAW_004 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_7NAW_006 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_7NAW_013 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_7NAW_014 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_7NAW_015 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | geometric J3_8B0X_012 J3_82365.5 | |
| J3_7NAW_016 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_6CZR_025 NA | |
| J4_7NAW_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_7NAW_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | ||
| J4_7NAW_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J5_7NAW_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | ||
| J5_7NAW_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | ||
| J5_7NAW_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_6CZR_021 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NAW_005 | No text annotation | ||
| J3_7NAW_007 | No text annotation | ||
| J3_7NAW_008 | No text annotation | ||
| J3_7NAW_009 | No text annotation | ||
| J3_7NAW_010 | No text annotation | ||
| J3_7NAW_011 | No text annotation | ||
| J3_7NAW_012 | No text annotation | ||
| J3_7NAW_017 | No text annotation |
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