IL_7NAW_049

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

7NAW|1|A|U|1126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAW_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.13

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7NAW|1|A|G|1124
7NAW|1|A|U|1125
7NAW|1|A|U|1126
7NAW|1|A|G|1127
7NAW|1|A|C|1128
*
7NAW|1|A|G|1144
7NAW|1|A|A|1145
7NAW|1|A|A|1146
7NAW|1|A|C|1147
7NAW|1|A|U|1148
7NAW|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10