IL_7NFX_168

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7NFX|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NFX_168 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1908

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7NFX|1|5|G|5000
7NFX|1|5|U|5001
7NFX|1|5|U|5002
*
7NFX|1|5|G|5045
7NFX|1|5|U|5046
7NFX|1|5|C|5047
7NFX|1|5|A|5048
7NFX|1|5|G|5049
7NFX|1|5|C|5050

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31