IL_7NHK_149

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAG*CGUAGAUA

Length

13 nucleotides

Bulged bases

7NHK|1|a|A|728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_149 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1723

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7NHK|1|a|U|710
7NHK|1|a|G|711
7NHK|1|a|U|712
7NHK|1|a|A|713
7NHK|1|a|G|714
*
7NHK|1|a|C|725
7NHK|1|a|G|726
7NHK|1|a|U|727
7NHK|1|a|A|728
7NHK|1|a|G|729
7NHK|1|a|A|730
7NHK|1|a|U|731
7NHK|1|a|A|732

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S11