IL_7NHK_168

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCG*CAAAUC

Length

10 nucleotides

Bulged bases

7NHK|1|a|A|1306, 7NHK|1|a|U|1307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_168 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.516

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7NHK|1|a|G|1281
7NHK|1|a|U|1282
7NHK|1|a|C|1283
7NHK|1|a|G|1284
*
7NHK|1|a|C|1303
7NHK|1|a|A|1304
7NHK|1|a|A|1305
7NHK|1|a|A|1306
7NHK|1|a|U|1307
7NHK|1|a|C|1308

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

30S ribosomal protein S10

Chain o

30S ribosomal protein S14 type Z