IL_7NHL_037

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7NHL|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_037 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0761

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|U|1062
7NHL|1|A|U|1063
7NHL|1|A|A|1064
7NHL|1|A|A|1065
7NHL|1|A|G|1066
7NHL|1|A|U|1067
7NHL|1|A|G|1068
*
7NHL|1|A|C|1184
7NHL|1|A|U|1185
7NHL|1|A|A|1186
7NHL|1|A|A|1187
7NHL|1|A|A|1188

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain M

50S ribosomal protein L13